2:35 - Tarkin: "If we are to crush this rebellion, we must make examples of its leaders."
Thrawn: "As you wish, Governor Tarkin."
There are two echoes here. Tarkin also uses this phrase in A New Hope when he says, "Now, Lord Vader will provide us with the location of the rebel fortress by the time this station is operational. We will then crush the rebellion with one swift strike" [38:52], and the phrase "As you wish" occurs a number of times in the original trilogy: in A New Hope, Vader says it after Tarkin asks him to release General Motti from his Force choke [38:45]; in The Empire Strikes Back, Boba Fett says it after Vader warns the bounty hunters against disintegrations [1:06:22]; in Return of the Jedi, Vader says it twice more in conversations with the Emperor [39:16 and 1:07:38], and Admiral Piett says it to Vader ("As you wish, my lord") [56:13]. In The Phantom Menace, Nute Gunray says, "As you wish" at the end of a conversation with Darth Sidious [5:04], and in Revenge of the Sith, Captain Typho says, "As you wish, my lady," to Padmé [1:41:23].
9:37 - Thrawn (to the Rebels): "There is no escape." Vader says this to Luke in The Empire Strikes Back [1:50:25], and Palpatine says this to Luke in Return of the Jedi [1:44:31].
11:10 - Kanan (to Ezra): "Good luck, kid." In The Empire Strikes Back, an unidentified Rebel pilot wishes Luke good luck [36:02] and Luke wishes Lando good luck [2:00:09], and in Return of the Jedi, Han and Lando wish each other good luck [Han to Lando at 50:33 and Lando to Han at 52:21].
12:38 - Konstantine (to Thrawn): "As you wish." See above, 2:35.
13:35 - Green squadron pilot: "I'm hit!" Obi-Wan says this in Revenge of the Sith after buzz droids land on his starfighter [5:23]. In A New Hope, this is said by a Rebel pilot ("I'm hit!" [1:48:06]), Luke ("I'm hit, but not bad" [1:48:48]), and Wedge ("I'm hit!" [1:54:32]). A rebel pilot also says, "I'm hit!" in Return of the Jedi [1:44:16].
14:11 - Kanan: "Bendu, we need your help." The same phrase appears in The Phantom Menace (Queen Amidala tells Jar Jar, "I need your help" [1:37:55]), Revenge of the Sith (Obi-Wan says, "Padmé, I need your help" [1:38:44]); and A New Hope (Obi-Wan says, "I need your help, Luke. She [Leia] needs your help." [36:03]).
16:48 - Hera: "Stay sharp, Ezra; we'll find you that opening." Han says, "Stay sharp" twice in A New Hope, once to Chewbacca before making the jump to hyperspace away from Tatooine [56:08] and once to Luke shortly before the Death Star's sentry ships attack [1:34:15].
18:28 - Konstantine: "Take evasive action!" In The Empire Strikes Back, an Imperial officer also says, "Take evasive action!" [37:19]
18:53 - Imperial officer (to Thrawn): "Sir, one Rebel ship escaped the blockade." In The Phantom Menace, Nute Gunray's confession to Darth Sidious has the same basic structure: "One Naboo cruiser got past the blockade" [27:22].
20:45 - Mon Mothma: "I wish I could help you, Commander Bridger, but I can't. Doing so would play into Thrawn's hands; he'd wipe out all we've worked to build." Queen Amidala uses nearly the same expression in The Phantom Menace when she tells Boss Nass that "the Trade Federation has destroyed all that we have worked so hard to build" [1:41:02].
21:03 - Mon Mothma (to Ezra): "I promise you we will do our best to negotiate fair treatment for the prisoners." In The Phantom Menace, Obi-Wan tells Anakin, "You will be a Jedi; I promise" [2:07:43], and in Revenge of the Sith, Padmé tells Anakin, "I'm not gonna die in childbirth, Ani; I promise you," and he replies, "No, I promise you" [53:46].