0:40 - Narrator: "Now the tumor is the only hope to finding answers for Tup's mysterious illness." Leia uses the phrase "only hope" twice in A New Hope ("Help me, Obi-Wan Kenobi; you're my only hope" [35:35] and "You must use the information in this R2 unit to help plan the attack; it's our only hope" [1:38:49]); C-3PO uses it once in The Empire Strikes Back ("Your highness, we must take this last transport; it's our only hope" [31:49]); Obi-Wan uses it once, referring to Luke, in Return of the Jedi ("You were our only hope" [47:24]); and Luke uses it once, referring to Leia, in Return of the Jedi ("If I don't make it back, you're the only hope for the Alliance" [1:19:39]). Sio Bibble also uses it in The Phantom Menace: "Our only hope is for the senate to side with us" [23:48].
4:02 - AZ-3 (after Fives attacks a group of clone troopers): "Look what you did! I cannot believe what you did!" In Indiana Jones and the Last Crusade, Dr. Jones, Sr. says almost exactly the same thing after Indiana Jones shoots a group of Nazis: "Look what you did! I can't believe what you did!" [51:26]
5:47 - Shaak Ti (to a clone trooper, referring to Fives): "I want him brought in alive. Have that ship tracked." This is somewhat similar to Vader's commands to the stormtroopers in A New Hope ("Bring me the passengers; I want them alive!" [6:08]) and to the bounty hunters in The Empire Strikes Back ("You are free to use any methods necessary, but I want them alive, no disintegrations" [1:06:14]), and while the specific dialogue isn't very similar, Captain Needa gives the same command in The Empire Strikes Back, referring to the crew of the Millennium Falcon: "Track them!" [1:07:42]
6:52 - Fives (to AZ-3, after he turns into a sort of speeder): "You're just full of surprises, aren't ya?" Luke uses the same expression during his duel with Vader in The Empire Strikes Back: "You'll find I'm full of surprises" [1:43:49].
14:19 - Nala Se (referring to Fives and AZ-3): "They must have escaped by now."
Shaak Ti: "Escape was never their intention."
There are similarities to two lines in A New Hope here. Referring to Obi-Wan, Tarkin says, "Surely he must be dead by now" [1:16:31], and later in the same conversation, Vader says, "Escape is not his plan" [1:16:59].
19:22 - Nala Se (to Shaak Ti, referring to Fives): "Master Jedi, we must terminate this trooper immediately." Referring to Leia, Tarkin gives the same command in A New Hope: "Terminate her immediately" [1:03:05]. In Return of the Jedi, C-3PO, translating for Jabba the Hutt, also uses this expression: "His high exaltedness, the great Jabba the Hutt has decreed that you are to be terminated immediately" [28:48].
20:08 - Shaak Ti (after Nala Se insists on going to Coruscant): "As you wish, Doctor." The phrase "As you wish" occurs a number of times in the original trilogy: in A New Hope, Vader says it after Tarkin asks him to release General Motti from his Force choke [38:45]; in The Empire Strikes Back, Boba Fett says it after Vader warns the bounty hunters against disintegrations [1:06:22]; in Return of the Jedi, Vader says it twice more in conversations with the Emperor [39:16 and 1:07:38], and Admiral Piett says it to Vader ("As you wish, my lord") [56:13]. In The Phantom Menace, Nute Gunray says, "As you wish" at the end of a conversation with Darth Sidious [5:04], and in Revenge of the Sith, Captain Typho says, "As you wish, my lady," to Padmé [1:41:23].